High-Protein Pepperoni Breakfast Cups

Featured in: Cozy Breakfasts

These savory breakfast cups combine the classic flavors of pizza—pepperoni, mozzarella, bell peppers, and Italian herbs—in a convenient handheld format. The egg mixture gets extra protein and creaminess from Greek yogurt, while the muffin tin preparation makes portion control effortless and cleanup simple.

Perfect for meal prep or busy mornings, these cups bake up in just 20 minutes and can be made ahead. The texture is light yet satisfying, with a golden top and tender center. Each cup delivers 11 grams of protein while staying low in carbs, making them ideal for high-protein eating plans.

Updated on Mon, 09 Feb 2026 21:29:08 GMT
Golden-brown High-Protein Pepperoni Breakfast Cups fresh from the oven, featuring melted mozzarella and savory pepperoni bits in a muffin tin. Pin
Golden-brown High-Protein Pepperoni Breakfast Cups fresh from the oven, featuring melted mozzarella and savory pepperoni bits in a muffin tin. | cinnamonnest.com

Imagine the savory aroma of a fresh pizza greeting you first thing in the morning. These High-Protein Pepperoni Breakfast Cups offer a delicious and nutritious way to start your day, combining the convenience of portable egg muffins with the irresistible flavors of melted mozzarella, zesty pepperoni, and classic pizza herbs. Perfect for meal prep enthusiasts, these cups provide a satisfying, protein-packed breakfast that feels like a treat.

Golden-brown High-Protein Pepperoni Breakfast Cups fresh from the oven, featuring melted mozzarella and savory pepperoni bits in a muffin tin. Pin
Golden-brown High-Protein Pepperoni Breakfast Cups fresh from the oven, featuring melted mozzarella and savory pepperoni bits in a muffin tin. | cinnamonnest.com

Using a muffin tin allows for effortless portion control and even cooking. By blending Greek yogurt into the eggs, you achieve a fluffy, tender texture that stays moist even after reheating. Whether you are fueling up for a busy workday or looking for a kid-friendly morning option, these breakfast cups deliver flavor and function in every bite.

Ingredients

  • Egg Mixture: 6 large eggs, 1/2 cup plain Greek yogurt (unsweetened), 1/4 cup milk, 1/4 tsp salt, 1/4 tsp black pepper, 1/2 tsp dried oregano, 1/2 tsp dried basil.
  • Filling: 3/4 cup shredded mozzarella cheese, 1/2 cup mini pepperoni slices (or regular pepperoni, chopped), 1/4 cup finely diced red bell pepper, 2 tbsp finely diced red onion, 2 tbsp grated Parmesan cheese, 2 tbsp pizza sauce (plus extra for serving, optional).
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Easily open jars, bottles, and cans while cooking, making meal prep smoother and less frustrating.
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Instructions

Step 1
Preheat oven to 375°F (190°C). Grease a 6-cup muffin tin or line with silicone liners.
Step 2
In a medium bowl, whisk together eggs, Greek yogurt, milk, salt, pepper, oregano, and basil until smooth.
Step 3
In a separate bowl, combine mozzarella, pepperoni, bell pepper, red onion, Parmesan, and pizza sauce.
Step 4
Evenly divide the filling mixture among the muffin cups.
Step 5
Pour the egg mixture over the filling, filling each cup about 3/4 full. Use a fork to gently stir each cup to distribute the filling.
Step 6
Bake for 18–20 minutes, or until the centers are just set and tops are lightly golden.
Step 7
Cool for 5 minutes before removing from the tin. Serve warm with extra pizza sauce if desired.

Zusatztipps für die Zubereitung

To ensure the best results, make sure the Greek yogurt is fully incorporated into the egg mixture for a smooth consistency. Greasing the muffin tin well or using high-quality silicone liners is essential for easy removal without sticking.

Varianten und Anpassungen

For a vegetarian version, omit the pepperoni and add sautéed mushrooms or fresh spinach. You can also experiment with different cheeses such as sharp cheddar or provolone to vary the flavor profile. If you enjoy spice, add a pinch of crushed red pepper flakes to the egg mixture.

Serviervorschläge

Serve these breakfast cups warm with a side of extra pizza sauce for dipping. They also pair wonderfully with fresh fruit or a light breakfast salad for a well-rounded meal.

Six savory High-Protein Pepperoni Breakfast Cups served warm on a white plate, ready for a quick, protein-rich morning meal. Pin
Six savory High-Protein Pepperoni Breakfast Cups served warm on a white plate, ready for a quick, protein-rich morning meal. | cinnamonnest.com

These High-Protein Pepperoni Breakfast Cups are a game-changer for anyone looking to simplify their morning routine without sacrificing taste or nutrition. With their savory pizza-inspired profile and impressive protein content, they are sure to become a staple in your breakfast rotation.

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Keeps paper towels accessible for wiping spills, drying hands, and cleaning surfaces while cooking.
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Recipe FAQ

Can I make these breakfast cups ahead of time?

Yes, these cups are excellent for meal prep. Store them in an airtight container in the refrigerator for up to 4 days and reheat gently in the microwave for 30–60 seconds before serving.

What can I substitute for the Greek yogurt?

Sour cream or cottage cheese blended until smooth works well as a substitute. For a dairy-free option, use unsweetened coconut yogurt or increase the milk slightly and add a tablespoon of olive oil for richness.

Can I freeze these breakfast cups?

Absolutely. Once completely cooled, wrap each cup individually in plastic wrap and place in a freezer-safe bag. They'll keep for up to 3 months. Thaw overnight in the refrigerator before reheating.

How do I know when the cups are done baking?

The cups are ready when the centers are just set—no longer jiggly but still slightly moist—and the tops are lightly golden. Overbaking will make them rubbery, so start checking at the 18-minute mark.

Can I double this recipe?

Yes, simply double all ingredients and use a standard 12-cup muffin tin. The baking time remains the same. You may also use a 24-cup mini muffin tin and reduce baking time to 12–15 minutes for bite-sized servings.

What other toppings work well in these cups?

Try cooked bacon crumbles, diced ham, sun-dried tomatoes, spinach, mushrooms, or black olives. Cheddar, provolone, or fontina cheese can replace the mozzarella for different flavor profiles.

High-Protein Pepperoni Breakfast Cups

Protein-packed mini cups with pepperoni, mozzarella, and pizza flavors baked in muffin tins.

Prep duration
15 min
Cooking duration
20 min
Total duration
35 min

Category Cozy Breakfasts

Difficulty Easy

Origin American

Yield 2 Servings

Dietary requirements Low-Carb

Ingredients

Egg Mixture

01 6 large eggs
02 1/2 cup plain Greek yogurt, unsweetened
03 1/4 cup whole milk
04 1/4 teaspoon salt
05 1/4 teaspoon black pepper
06 1/2 teaspoon dried oregano
07 1/2 teaspoon dried basil

Filling

01 3/4 cup shredded mozzarella cheese
02 1/2 cup mini pepperoni slices, chopped
03 1/4 cup red bell pepper, finely diced
04 2 tablespoons red onion, finely diced
05 2 tablespoons grated Parmesan cheese
06 2 tablespoons pizza sauce

Directions

Step 01

Prepare Muffin Tin: Preheat oven to 375°F. Grease a 6-cup muffin tin or line with silicone liners.

Step 02

Prepare Egg Mixture: In a medium bowl, whisk together eggs, Greek yogurt, milk, salt, pepper, oregano, and basil until smooth and combined.

Step 03

Combine Filling Ingredients: In a separate bowl, combine mozzarella, pepperoni, bell pepper, red onion, Parmesan, and pizza sauce until evenly mixed.

Step 04

Distribute Filling: Evenly divide the filling mixture among the 6 muffin cups, distributing ingredients consistently.

Step 05

Add Egg Mixture: Pour the egg mixture over the filling in each cup, filling approximately 3/4 full. Use a fork to gently stir and distribute filling throughout.

Step 06

Bake Frittatas: Bake for 18 to 20 minutes, or until centers are just set and tops are lightly golden.

Step 07

Cool and Serve: Cool for 5 minutes before removing from tin. Serve warm with additional pizza sauce if desired.

Necessary tools

  • 6-cup muffin tin
  • Mixing bowls
  • Whisk
  • Measuring cups and spoons
  • Fork

Allergy information

Review ingredients carefully for potential allergens and consult with a healthcare provider if you're uncertain.
  • Contains eggs
  • Contains milk and dairy products
  • May contain gluten from pepperoni or pizza sauce; verify product labels for allergen information

Nutritional information (per serving)

These values are approximate guidelines only and shouldn't replace professional medical advice.
  • Calories: 135
  • Fat: 9 g
  • Carbs: 2 g
  • Protein: 11 g